CORAL Publications List

Hochberg EJ, and Gierach MM (2021) Missing the reef for the corals: Unexpected trends between coral reef condition and the environment at the ecosystem scale. Frontiers in Marine Science, in revision.

Candela A, Edelson K, Gierach MM, Thompson DR, Woodward G, and Wettergreen D (2021) Using remote sensing and in situ measurements for efficient mapping and optimal sampling of coral reefs. Frontiers in Marine Science, in revision.

Pisapia C, Hochberg EJ, Carpenter R (2021) Modes of metabolic performance of Pacific Reefs. Geophysical Research Letters,

Hochberg EJ, Peltier SA, Maritorena S (2020) Trends and variability in spectral diffuse attenuation of coral reef water. Coral Reefs,

Garcia R, Lee ZP, Barnes B, Hu C, Dierssen H, Hochberg EJ (2020) Benthic classification and improved IOP retrievals in shallow water environments using MERIS imagery. Remote Sensing, 249, 112015,

Bell TW, Okin GS, Cavanaugh KC, Hochberg EJ (2020) Impact of water characteristics on the discrimination of benthic cover in and around coral reefs from imaging spectrometer data. Remote Sensing of Environment, 239,

Pisapia C, Hochberg EJ, Carpenter R (2019) Multi-decadal change in reef-scale production and calcification associated with recent disturbances on a Lizard Island reef flat. Frontiers in Marine Science, 6,

Dierssen HM, Bostrom KJ, Chlus A, Hammerstrom K, Thompson D, Lee ZP (2019) Pushing the limits of seagrass remote sensing in the turbid waters of Elkhorn Slough, California. Remote Sensing, 11(14),

Russell B, Dierssen H, Hochberg EJ (2019) Water column optical properties of Pacific coral reefs across geomorphic zones and in comparison to offshore water. Remote Sensing, 11(15), 1757,

Hedley J, Mirhakak M, Wentworth A, Dierssen HM (2018) Influence of three-dimensional coral structures on hyperspectral benthic reflectance and water-leaving reflectance. Applied Sciences, 8, 2688,

Sawall Y, Hochberg EJ (2018) Diel versus time-integrated (daily) photosynthesis and irradiance relationships of coral reef organisms and communities. PLOS ONE,

Garcia RA, Lee Z, Hochberg EJ (2018) Hyperspectral shallow-water remote sensing with an enhanced benthic classifier. Remote Sens 10, 147,

Ackelson SG, Smith JP, Rodriguez LM, Moses WJ, Russel BJ (2017) Autonomous coral reef survey in support of remote sensing. Frontiers in Marine Science,

Haag JM, Van Gorp BE, Mouroulis P, Thompson DR (2017) Radiometric and spectral stray light correction for the portable remote imaging spectrometer (PRISM) coastal ocean sensor. Proc. SPIE 10402, Earth Observing Systems XXII, 104020E,

Thompson DR, Hochberg EJ, Asner GP, Green RO, Knapp DE, Gao BC, Garcia R, Gierach M, Lee Z, Maritorena S, Fick R (2017) Airborne mapping of benthic reflectance spectra with Bayesian linear mixtures. Remote Sensing of Environment 200,

CORAL Relevant Literature

IPCC (2014) Summary for Policymakers. In: Field CB, Barros VR, Dokken DJ, Mach KJ, Mastrandrea MD, Bilir TE, Chatterjee M, Ebi KL, Estrada YO, Genova RC, Girma B, Kissel ES, Levy AN, MacCracken S, Mastrandrea PR, White LL (eds) Climate Change 2014: Impacts, Adaptation, and Vulnerability Part A: Global and Sectoral Aspects Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change. Cambridge University Press, Cambridge, United Kingdom, and New York, NY, USA, pp1-32.

Lee Z, Pahlevan N, Ahn YH, Greb S, O'Donnell D (2013) Robust approach to directly measuring water-leaving radiance in the field. Appl Optics 52:1693-1701.

Atkinson MJ (2011) Biogeochemistry of nutrients. In: Dubinsky Z, Stambler N (eds) Coral Reefs: An Ecosystem in Transition. Springer, Dordrecht, pp199-206.

Falter JL, Atkinson MJ, Schar DW, Lowe RJ, Monismith SG (2011) Short-term coherency between gross primary production and community respiration in an algal-dominated reef flat. Coral Reefs 30:53-58.

Hochberg EJ (2011) Remote sensing of coral reef processes. In: Dubinsky Z, Stambler N (eds) Coral Reefs: An Ecosystem in Transition. Springer, The Netherlands, pp25-35.

Hoegh-Guldberg O (2011) Coral reef ecosystems and anthropogenic climate change. Regional Environmental Change 11:215-227.

Hochberg EJ, Atkinson MJ (2008) Coral reef benthic productivity based on optical absorptance and light-use efficiency. Coral Reefs 27:49-59.

Gao BC, Montes MJ, Li RR, Dierssen HM, Davis CO (2007) An atmospheric correction algorithm for remote sensing of bright coastal waters using MODIS land and ocean channels in the solar spectral region. IEEE Trans Geosci Remote Sens 45:1835-1843.

IPCC (2007) Cross-chapter case study. In: Parry ML, Canziani OF, Palutikof JP, van der Linden PJ, Hanson CE (eds) Climate Change 2007: Impacts, Adaptation and Vulnerability Contribution of Working Group II to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge, UK 843-868.

Andréfouët S, Payri C, Hochberg EJ, Hu C, Atkinson MJ, Muller-Karger FE (2004) Use of in situ and airborne reflectance for scaling-up spectral discrimination of coral reef macroalgae from species to communities. Mar Ecol Prog Ser 283:161-177.

Hochberg EJ, Atkinson MJ (2003) Capabilities of remote sensors to classify coral, algae and sand as pure and mixed spectra. Remote Sens Environ 85:174-189.

Hochberg EJ, Atkinson MJ, Andréfouët S (2003) Spectral reflectance of coral reef bottom-types worldwide and implications for coral reef remote sensing. Remote Sens Environ 85:159-173.

Hughes TP, Baird AH, Bellwood DR, Card M, Connolly SR, Folke C, Grosberg R, Hoegh-Guldberg O, Jackson JBC, Kleypas J, Lough JM, Marshall P, Nystrom M, Palumbi SR, Pandolfi JM, Rosen B, Roughgarden J (2003) Climate change, human impacts, and the resilience of coral reefs. Science 301:929-933.

Bruckner AW (2002) Life-saving products from coral reefs. Issues Sci Technol 18:39-44. Yentsch CS, Yentsch CM, Cullen JJ, Lapointe B, Phinney DA, Yentsch SW (2002) Sunlight and water transparency: cornerstones in coral research. J Exp Mar Biol Ecol 268:171-183 .

Gao BC, Montes MJ, Ahmad Z, Davis CO (2000) Atmospheric correction algorithm for hyperspectral remote sensing of ocean color from space. Appl Optics 39:887-896.

Hochberg EJ, Atkinson MJ (2000) Spectral discrimination of coral reef benthic communities. Coral Reefs 19:164-171.

Lee ZP, Carder KL, Mobley CD, Steward RG, Patch JS (1999) Hyperspectral remote sensing for shallow waters: 2. Deriving bottom depths and water properties by optimization. Appl Optics 38:3831-3843.

Lee ZP, Carder KL, Mobley CD, Steward RG, Patch JS (1998) Hyperspectral remote sensing for shallow waters. 1. A semianalytical model. Appl Optics 37:6329-6338.

Connell JH (1997) Disturbance and recovery of coral assemblages. Coral Reefs 16:S101-S113.

Maritorena S (1996) Remote sensing of the water attenuation in coral reefs: a case study in French Polynesia. Int J Remote Sens 17:155-166.

Maritorena S, Guillocheau N (1996) Optical properties of water and spectral light absorption by living and non-living particles and by yellow substances in coral reef waters of French Polynesia. Mar Ecol Prog Ser 131:245-255.

Ahmad W, Neil DT (1994) An evaluation of Landsat Thematic Mapper (TM) digital data for discriminating coral reef zonation: Heron Reef (GBR). Int J Remote Sens 15:2583-2597.

Maritorena S, Morel A, Gentili B (1994) Diffuse reflectance of oceanic shallow waters: Influence of water depth and bottom albedo. Limnol Oceanogr 39:1689-1703.

Done TJ (1992) Phase shifts in coral reef communities and their ecological significance. Hydrobiologia 247:121-132.

Smith SV, Buddemeier RW (1992) Global change and coral reef ecosystems. Annu Rev Ecol Syst 23:89-118.

Kuchler DA, Biña RT, Claasen DvR (1988) Status of high-technology remote sensing for mapping and monitoring coral reef environments. Proc 6th Int Coral Reef Symp 1:97-101.

Kinsey DW (1985) Metabolism, calcification and carbon production I: Systems level studies. Fifth International Coral Reef Congress 4:505-526.

Atkinson MJ, Grigg RW (1984) Model of coral reef ecosystem. II. Gross and net benthic primary production at French Frigate Shoals, Hawaii. Coral Reefs 3:13-22.

Bouchon C (1981) Comparison of two quantitative sampling methods used in coral reef studies: The line transect and the quadrat methods. 4th International Coral Reef Symposium 2:375.

Odum HT, Odum EP (1955) Trophic structure and productivity of a windward reef community on Eniwetok Atoll. Ecological Monographs 25:291-320.


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